Questions:

Question 1 - How many Kryptonian ships were there, anyway, and what happened to them? This is my count.

1) Clark's ship that took baby Clark from Krypton to Earth and ended up in the Kent barn. Its Phantom Drive was used to get rid of the bad guys. Outcome: destroyed.

2) Zod's ship. Sent back to the Phantom Zone with all hands (except for Zod). Outcome: off Earth and no problems for us anymore

3) The World Builder (which had been piggybacking on Zod's ship) - destroyed by Clark. Outcome: in shards? Or being taken by LexCorp to have all its Kryptonian technology dissected and analyzed?

4) The scout ship at Ellesmere Island that sent the distress signal that lured Zod to Earth. Did this ship get destroyed too? I thought it was going to be up there at the North Pole serving as Clark's Fortress of Solitude, with Jor-El as its AI. But am I mistaken? Did it really get destroyed, and is Clark now alone on Earth as the Last Son of Krypton, with no Kryptonian technology to back him up?

Question 2 - Dr. Hamilton and Col. Hardy either died or went to the Phantom Zone along with the Kryptonians, right?

Question 3 - Clark used a Phantom Drive when he was an infant. Why didn't he get pulled into the Phantom Zone along with the other Kryptonians?