Thanks for the fun game
I wasn't very good at it, but here are the few ones I think I do know:
Bikini Bottom News - SongeBob SquarePants *yay*
New York Ledger - I know that's not a comic, but isn't this from Law & Order?
North Borneo Gazette - Superman
Quahog Informan - Family Guy
The Arlen Bystander - I don't know, but I like "Bystander" for a Newspaper
The Bay Mirror - again no comic, but isn't that the paper Phoebe works for in Charmed?
The Cardiff Gazette - That should be Dr Who
The Daily Brute - again, no idea but great name
The Daily Planet - now there's a real one
The Pickford Penny Pincher - great name
The Springfield Shopper Simpsons
The Torch - Smallville
Actually, I think quite a few of the newspaper names on your list sound real, so I really couldn't figure out those two.
Edit: I saw it in Karen's post, but I swear I knew the Bugle to be Peter Parker's newspaper, must have deleted it by accident.